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Oligo Mod List

Synoligo CodeDescriptionFormula WeightExtinction Coefficient5′ ModInternal Mod3′ Mod
-ButylA suffix used together with other code indicating a butyl phosphoramidate backbone, e.g., dA-Butyl119.180YesYesNo
-MesylA suffix used together with other code indicating a mesyl phosphoramidate backbone, e.g., dA-Mesyl76.990YesYesNo
-PN1A suffix used together with other code indicating a guanidine-based backbone, e.g., dA-PN195.080YesYesNo
-P34SA stable isotopic label incorporating 34S into phosphorothioate (PS) linkages for use as an internal standard for therapeutic oligos.  
+1.91
c.f. PS backbone
0YesYesNo
-P18OA stable isotopic label incorporating 18O into phosphodiester (PO) linkages for use as an internal standard for therapeutic oligos. +2.00
c.f. PO
backbone
0YesYesNo
Nan equal molar mix of DNA bases (A,C,G,T)308.9510,750YesYesYes
Man equal molar mix of DNA bases (A,C)301.2011,400YesYesYes
Ran equal molar mix of DNA bases (A,G)321.2113,450YesYesYes
Wan equal molar mix of DNA bases (A,T)308.7012,050YesYesYes
San equal molar mix of DNA bases (G,C)309.209,450YesYesYes
Yan equal molar mix of DNA bases (C,T)296.698,050YesYesYes
Kan equal molar mix of DNA bases (G,T)316.7010,100YesYesYes
Van equal molar mix of DNA bases (A,C,G)310.5311,433YesYesYes
Han equal molar mix of DNA bases (A,C,T)302.2010,500YesYesYes
Dan equal molar mix of DNA bases (A,G,T)315.5411,867YesYesYes
Ban equal molar mix of DNA bases (G,C,T)307.539,200YesYesYes
rNan equal molar mix of RNA bases (rA,rC,rG,rU)321.4411,000YesYesYes
rMan equal molar mix of RNA bases (rA,rC)317.2011,300YesYesYes
rRan equal molar mix of RNA bases (rA,rG)337.2113,450YesYesYes
rWan equal molar mix of RNA bases (rA,rU)317.6912,650YesYesYes
rSan equal molar mix of RNA bases (rG,rC)325.209,350YesYesYes
rYan equal molar mix of RNA bases (rC,rU)305.678,550YesYesYes
rKan equal molar mix of RNA bases (rG,rU)325.6910,700YesYesYes
rVan equal molar mix of RNA bases (rA,rC,rG)326.5311,367YesYesNo
rHan equal molar mix of RNA bases (rA,rC,rU)313.5210,833YesYesNo
rDan equal molar mix of RNA bases (rA,rG,rU)326.8612,267YesYesYes
rBan equal molar mix of RNA bases (rG,rC,rU)318.859,533YesYesYes
1Me-psd-rUN1-methyl pseudo ribo uridine320.198,100YesYesYes
20kDa-PEGPEG 20K NHS20,000.000YesYesYes
2’5’dA3′-deoxy A313.2115,400YesYesYes
2’5’dC3′-deoxy C289.187,400YesYesYes
2’5’dG3′-deoxy G329.2111,500YesYesYes
2’5’dT3′-deoxy T304.198,700YesYesYes
2’5’mA3′-OMe A343.2415,400YesYesYes
2’5’mC3′-OMe C319.217,200YesYesYes
2’5’mG3′-OMe G359.2311,500YesYesYes
2’5’mU3′-OMe U320.199,900YesYesYes
2’5’rA3′-ribo A329.2115,400YesYesYes
2’5’rC3′-ribo C305.187,200YesYesYes
2’5’rG3′-ribo G345.2111,500YesYesYes
2’5’rU3′-ribo U306.179,900YesYesYes
2NH2-rA2′-amino A328.2315,400YesYesYes
2NH2-rC2′-amino C304.207,200YesYesYes
2NH2-rG2′-amino G344.2211,500YesYesYes
2NH2-rU2′-amino U305.189,900YesYesYes
2’NH2-Methacrylate-A2′-amino-A, methacrylate adduct396.3015,400YesYesNo
2’NH2-Methacrylate-C2′-amino-C, methacrylate adduct372.277,200YesYesNo
2’O-C16-A2′-O-Hexadecyl A553.6415,400YesYesYes
2’O-C16-C2′-O-Hexadecyl C529.617,200YesYesYes
2’O-C16-G2′-O-Hexadecyl G569.6411,500YesYesYes
2’O-C16-U2′-O-Hexadecyl U530.609,900YesYesYes
2’O-C22-A2′-O-C22 A637.8015,400YesYesYes
2’O-C22-C2′-O-C22 C613.787,200YesYesYes
2’O-C22-G2′-O-C22 G653.8011,500YesYesYes
2’O-C22-U2′-O-C22 U614.769,900YesYesYes
2’O-C3NH2-A2′-O-aminopropyl A386.3015,400YesYesYes
2’O-C3NH2-C2′-O-aminopropyl C362.287,200YesYesYes
2’O-C3NH2-G2′-O-aminopropyl G402.3011,500YesYesYes
2’O-C3NH2-U2′-O-aminopropyl U363.269,900YesYesYes
2’O-prg-A2′-O-propargyl A367.2615,400YesYesYes
2’O-prg-C2′-O-propargyl C343.237,200YesYesYes
2’O-prg-G2′-O-propargyl G383.2611,500YesYesYes
2’O-prg-U2′-O-propargyl U344.219,900YesYesYes
3′-6FAM3′ (6-FAM) Fluorescein with 1,3-diol linker, same as Int-FAM567.1321,000NoNoYes
3’AmC33′ amino C3 modifier153.070NoNoYes
3’Azide-PyC43′ Azide Pyrrolidine C4290.210NoNoYes
3Biotin3′ Biotin with glycerin linker437.440NoNoYes
3Cy33′ Cyanine 3 , same as Cy3507.594,930NoNoYes
3Cy55′ Cyanine 5, same as Cy5533.6310,000NoNoYes
3Dabcyl3′ Dabcyl 462.4411,100NoNoYes
3-deaza-3-Me-dA3-deaza-3-Me deoxy A326.2515,400YesYesYes
3Ferrocene3′ Ferrocene365.100NoNoYes
3′-Fluorescein3′ Fluorescein with thiourea AmC7 (1,3-diol) linker, same as Int-Fluorescein598.5621,000NoNoYes
3Hexynyl3′ Hexynyl273.220NoNoYes
3MGBCDPI3 MGB 831.8737,900NoNoYes
3’NH2-dA3′-amino-2′-deoxy A312.2315,400YesYesYes
3’NH2-dC3′-amino-2′-deoxy C288.207,400YesYesYes
3’NH2-dG3′-amino-2′-deoxy G328.2311,500YesYesYes
3’NH2-dT3′-amino-2′-deoxy T303.218,700YesYesYes
3Nitro-Pyrrole2′-deoxy 3-nitropyrrole290.177,700YesYesYes
3Palm3′ Palmitate-AmC7 (1,3-diol based)447.600NoNoYes
3’prg-5MedC3′-Propargyl-2′-deoxy 5-Me C341.267,400NoNoYes
3PuromycinPuromycin 533.4815,400NoNoYes
3’thio-dI3′-Thio-2′-deoxy Inosine330.267,500YesYesYes
40kDa-PEG40kDa Y arm NHS ester40,000.000YesYesYes
40kDa-PEG-F40kDa Forked arm NHS ester40,000.000YesYesYes
4-Cl-3-TFMP-Isocyanate4-chloro-3-trifluoromethylphenyl isocyanate221.560YesYesYes
4thio-dT4-Thio 2′-deoxy T320.268,700YesYesYes
4thio-dU4-Thio 2′-deoxy U306.238,700YesYesYes
4thio-rU4-Thio ribo U322.229,900YesYesYes
5-6ROX-N 6-ROX NHS ester (only 6 isomer)516.5822,600YesYesYes
5AcryditeAcrydite (Methacrylate C6)247.230YesNoNo
5’AmC35′ amino-C3 modifier137.080YesNoNo
5’BHQ-15′ BHQ-1538.498,000YesNoNo
5’BHQ-25′ BHQ-2540.478,000YesNoNo
5Biotin5′ Biotin C6 linker405.450YesNoNo
5Br-dC5-Br-deoxy C368.087,400YesYesYes
5Br-dU5-Br-deoxy U369.078,700YesYesYes
5Carboxy-dC5-carboxy-deoxy C333.197,400YesYesYes
5Chol-PEG5′ Cholesterol Penta ethylene glycol725.950YesNoNo
5Chol-TEG5′ Cholesterol tetra ethylene glycol681.900YesNoNo
5Dabcyl5′ Dabcyl430.1811,100YesNoNo
5Ethynyl-dU5-Ethynyl-deoxy U314.198,700YesYesYes
5Ethynyl-rU5-Ethynyl-ribo U330.199,900YesYesYes
5F-dC5-F deoxy C307.188,700YesYesYes
5F-dU5-F-deoxy U308.168,700YesYesYes
5Formyl-dC5-Formyl-deoxy C317.197,400YesYesYes
5F-rU5-F-ribo U324.169,900YesYesYes
5Hydroxy-dU5-OH-deoxy U306.178,700YesYesYes
5Hydroxymethyl-dC5-Hydroxymethyl deoxy C319.217,400YesYesYes
5I-dC5-I-deoxy C415.087,400YesYesYes
5I-dT5′-I-deoxy T414.098,700YesNoNo
5I-dU5-I-deoxy U416.078,700YesYesYes
5’Mal5′ Maleimide Modifier (Diels-AlderProtected Form)299.220YesNoNo
5Me-BNA-C2′,4′-BNA 5-methyl C360.267,200YesYesYes
5Me-cetCcEt 5-methyl C345.257,200YesYesYes
5Me-dC5-Me-deoxy C303.217,400YesYesYes
5Me-dCs5-Me-deoxy C dithiophosphate319.277,400YesYesYes
5Me-dZebularine5-Me-2′-deoxyZebularine288.197,400YesYesYes
5Me-LNA-CLNA-5-methyl C331.227,200YesYesYes
5Me-mC5-Me-mC333.247,200YesYesYes
5Me-moeC5-Me-moeC377.297,200YesYesYes
5Me-nmaC2′-O NMA 5-Me C390.297,200YesYesYes
5Me-rC5-Me-rC319.217,200YesYesYes
5Me-rU5-Me-rU320.199,900YesYesYes
5MGB5′-CDPI3 MGB872.9637,900YesNoNo
5’N3-dT5′-azido-dT329.098,700YesNoNo
5’NH2-Methacrylate-mG5′-amino-mG, methacrylate adduct426.3311,500YesNoNo
5’NH2-mG5′-Amino mG359.2611,500YesYesYes
5Nitro-indole2′-deoxy-5-Nitroindole340.2316,000YesYesYes
5Oct-dUC8-Alkyne-dU, 5-Octadiynyl dU394.328,700YesYesYes
5OHbutynl-dUSuper T, 5-(4-hydroxybut-1-yn-1-yl)-dU358.243,800YesYesYes
5’OMe-dT5′-O-Me dT318.2215,400YesNoNo
5Palm5′-Palmitate with C6 linker417.560YesNoNo
5-propar-dU5-Propargyloxy dU344.218,700YesYesYes
5’rAPP5′ Adenylation410.2015,400YesNoNo
5TauMe-2Thio-rU5-taurinomethyl-2-thio rU559.559,900YesYesYes
5VIC5′ VIC with C6 linker716.8997,000YesNoNo
5VPfU5′-VP-2′-F U384.159,900YesNoNo
5VPmA5′-VP-mA419.2215,400YesNoNo
5VPmC5′-VP-mC395.207,200YesNoNo
5VPmG5′-VP-mG435.2211,500YesNoNo
5VPmoeT5′-VP-moe T454.269,900YesNoNo
5VPmU5′-VP-mU396.199,900YesNoNo
5VPrU5′-VP-rU355.199,900YesNoNo
5VPTnam5′-VP-Tnam467.268,700YesNoNo
6-Aza-dU6-Aza-dU291.168,700YesYesYes
6-FAM5′ Fluorescein with C6 linker537.4620,960YesNoNo
6FAM-N6FAM NHS358.3020,960YesYesYes
6FAM-Serinol6-Fluorescein with Serinol linker569.4620,900YesYesYes
6-HEX-N6-HEX NHS564.9731,600YesYesYes
6-ROX-Mal6-ROX-C2-Maleimide656.7322,600YesYesYes
6thio-dG6-Thiol-dG345.2611,500YesYesYes
6thio-rG6-Thio-rG361.2611,500YesYesYes
7-amido-7-deaza-dG7-amido-7-deaza-dG371.2411,500YesYesYes
7-de-8-aza-dG7-Deaza-8-aza-dG329.2011,500YesYesYes
7-deaza-7-Me-dG7-deaza-7-Me-dG342.2411,500YesYesYes
7-de-dA7-deaza dA312.2215,400YesYesYes
7-de-dG7-deaza-dG328.220YesYesYes
7-de-mA7-deaza-2′-O-Methyl Adenosine278.0815,400YesYesYes
7-de-mG7-deaza-2′-O-Methyl Guanosine358.2511,500YesYesYes
8-amino-dG8-amino dG344.220YesYesYes
8-Aza-NB8-Azanebularine315.1815,400YesYesYes
8-Oxo-dA8-Oxo-dA329.2115,400YesYesYes
8-Oxo-dG8-Oxo-dG345.2111,500YesYesYes
Abasic-IIDNA abasic, mixture of alpha and beta anomer196.100YesYesYes
AF350Alexa Fluor 350 NHS295.264,750YesYesYes
AF350-MalAlexa Fluor 350 MAL477.494,750YesYesYes
AF405Alexa Fluor 405 NHS609.607,820YesYesYes
AF488Alexa Fluor 488 NHS516.4521,300YesYesYes
AF488-MalAlexa Fluor 488 C5 Maleimide697.6621,300YesYesYes
AF514Alexa Fluor 514598.9024,800YesYesYes
AF532Alexa Fluor 532 NHS608.6819,440YesYesYes
AF546Alexa Fluor 546 NHS943.3223,520YesYesYes
AF555Alexa Fluor 555 NHS815.8012,000YesYesYes
AF568Alexa Fluor 568 NHS676.7141,085YesYesYes
AF594Alexa Fluor 594 NHS704.7638,700YesYesYes
AF610-XAlexa Fluor 610-X NHS967.3556,760YesYesYes
AF633NAlexa Fluor 633 NHS907.300YesYesYes
AF647Alexa Fluor 647840.990YesYesYes
AF647-MalAlexa Fluor 647 Maleimide982.130YesYesYes
AF660Alexa Fluor 660 NHS763.000YesYesYes
AF680Alexa Fluor 680 NHS844.000YesYesYes
AF700Alexa Fluor 700 NHS970.790YesYesYes
AF750Alexa Fluor 750867.300YesYesYes
AF750-MalAlexa Fluor 750 C5 Maleimide1,054.210YesYesYes
Alkyne-PEG5-NAlkyne-PEG5 NHS286.320YesYesYes
Am55′ Amino Modifier 5, C2-O-C2 version167.100YesNoNo
Am7Amino modifier 7, C3-O-Glycerin version211.150YesYesYes
AmC12Amino Modifier C12263.320YesNoNo
AmC2-dTAmino Modifier C2 dT402.308,700YesYesYes
AmC6-dAAmino-Modifier C6 dA427.4015,400YesYesYes
AmC6-dCAmino-Modifier C6 dC457.427,400YesYesYes
AmC6-dGN2-Amino-Modifier C6 dG428.3811,500YesYesYes
AmC6-dTAmino-modifier C6 dT458.418,700YesYesYes
AmC6-rUAmino-Modifier C6 rU474.409,900YesYesYes
AmC7Amino-Modifier C7, 1,3-diol version209.180YesYesYes
AmTEG5′ Amino modifier TEG255.210YesNoNo
araAarabinose A329.2115,400YesYesYes
araCarabinose C305.187,200YesYesYes
araGarabinose G345.2111,500YesYesYes
araUarabinose U306.179,900YesYes Yes
ATTO390-NATTO 390 NHS326.4111,040YesYesYes
ATTO425-NATTO 425 NHS383.4012,150YesYesYes
ATTO430LS-NATTO 430LS NHS548.7013,120YesYesYes
ATTO465-NATTO 465 NHS279.3481,750YesYesYes
ATTO488-NATTO 488 NHS572.5919,800YesYesYes
ATTO488-N3ATTO 488 azide789.0019,800YesYesYes
ATTO490LS-NATTO 490LS NHS655.8014,800YesYesYes
ATTO514-NATTO 514 NHS736.6424,150YesYesYes
ATTO520-NATTO 520 NHS348.5044,000YesYesYes
ATTO532-NATTO 532 NHS627.6923,000YesYesYes
ATTO542-NATTO 542 NHS893.0021,600YesYesYes
ATTO550-NATTO 550 NHS575.8027,600YesYesYes
ATTO565-NATTO 565 NHS492.5632,400YesYesYes
ATTO565-N3ATTO 565 azide710.0032,400YesYesYes
ATTO575Q-NATTO 575Q NHS592.0034,800YesYesYes
ATTO590-NATTO 590 NHS572.7050,400YesYesYes
ATTO594-NATTO 594 NHS787.9031,200YesYesYes
ATTO610-NATTO 610 NHS372.504,500YesYesYes
ATTO620-NATTO 620 NHS494.654,800YesYesYes
ATTO633-NATTO 633 NHS533.706,500YesYesYes
ATTO643-NATTO 643 NHS815.007,500YesYesYes
ATTO647-NATTO 647N NHS628.896,000YesYesYes
ATTO655-NATTO 655 NHS509.6030,000YesYesYes
ATTO665-NATTO 665 NHS604.9111,200YesYesYes
ATTO700-NATTO 700 NHS547.7031,200YesYesYes
ATTO740-NATTO 740 NHS448.568,400YesYesYes
ATTO-MB2-MalATTO Methlyene Blue2 maleimide477.5010,300YesYesYes
ATTO-MB2-NATTO Methlyene Blue2 NHS338.450YesYesYes
ATTO-Rho101-NATTO Rho 101 NHS571.9821,600YesYesYes
ATTO-Rho11-NATTO Rho 11 NHS547.7031,200YesYesYes
ATTO-Rho13-NATTO Rho13, NHS627.8235,000YesYesYes
ATTO-Rho6G-NATTO Rho 6G NHS495.6025,300YesYesYes
AzBenAzobenzene375.320YesYesYes
Azido-C2-NAzidoacetic acid NHS83.050YesYesYes
Azido-C4-NAzido C4 NHS111.100YesYesYes
Azido-C6-NAzido C6 NHS139.160YesYesYes
Azido-PEG3-MalAzido-PEG3-Maleimide369.370YesYesYes
Azido-PEG3-NAzido-PEG3-NHS229.230YesYesYes
Azido-PEG4-NAzido PEG4 NHS273.280YesYesYes
BAButyric acid100.070YesNoNo
BCN5′ endo-BCN343.320YesNoNo
BCN-Nendo-BCN-NHS176.210YesYesYes
BCN-PEG2-MalMal-NH-PEG2-BCN475.540YesYesYes
BCN-PEG2-Nendo-BCN-PEG2-NHS335.580YesYesYes
BCN-PEG3-Nendo-BCN-PEG3-NHS379.450YesYesYes
BG-GLA-NBG-GLA Snap-tag367.390YesYesYes
BHQ-13′ BHQ-1 and internal BHQ-1554.508,000YesYesYes
BHQ-1-dTBHQ-1 dT960.9417,650YesYesYes
BHQ-1-NBHQ-1 NHS487.548,000YesYesYes
BHQ-2BHQ-2556.478,000YesYesYes
BHQ-2-dTBHQ-2 dT962.9117,650YesYesYes
BHQ-3BHQ-3 597.6413,000YesYesYes
BHQ-3-NBHQ-3 NHS529.6713,000YesYesYes
BiotinBBtert-butyl-benzoyl protected Biotin with glycerin linker437.450YesYesYes
BHQ-3-DBCOBHQ-3 DBCO956.1413,000YesYesYes
Biotin-dTBiotin dT amdite684.708,700YesYesYes
Biotin-PEG3-NBiotin-PEG3-NHS430.540YesYesYes
Biotin-PEG4-NBiotin-PEG4-NHS474.590YesYesYes
BiotinTEGBiotinTEG569.610YesYesYes
Bis-PEG5-NNHS PEG5 NHS304.340YesYesYes
BNA-A2′,4′-BNA A370.2615,400YesYesYes
BNA-G2′,4′-BNA G386.2611,500YesYesYes
BNA-T2′,4′-BNA T361.259,900YesYesYes
C10-NDecanoic acid NHS155.260YesYesYes
C11Undecanyl234.280YesNoNo
C12-NLauric acid NHS182.310YesYesYes
C14Tetradecanyl276.360YesNoNo
C3NH25′ Amino-C3 Modifier137.070YesNoNo
C5-COOHCarboxy-Modifier C5180.100YesNoNo
C6NH2Aminohexyl, AmC6, Amino modifier C6179.160YesYesYes
C8Alkyne-dCC8-Alkyne-dC, 5-Octadiynyl dC393.347,400YesYesYes
C8Alkyne-dTC8-Alkyne-dT, 5-Octadiynyl dT394.328,700YesYesYes
Carboxy-C10-NCarboxy-Modifier C10 NHS233.220YesYesYes
Carboxy-dTCarboxy-dT360.218,700YesYesYes
cetAcEt-A355.2415,400YesYesYes
cetCcEt-C331.227,200YesYesYes
cetGcEt-G371.2411,500YesYesYes
cetTcEt-T346.239,900YesYesYes
cetUcEt-U332.209,900YesYesYes
Cl-C6-PEG4-NHCO-C3-NHaloTag NHS408.940YesYesYes
CNVK3-Cyanovinylcarbazole (CNVK)396.3411,300YesYesYes
C-POEtdC P-Ethoxy317.247,400YesYesYes
Cy3Cyanine 3 , same as 3Cy3506.584,930YesYesNo
Cy3.5Cyanine 3.5607.7147,489YesNoYes
Cy3B-MalCy3B Maleimide682.7910,400YesYesYes
Cy3B-NCy3B NHS542.6510,400YesYesYes
Cy5Cyanine 5, same as 3Cy5532.6210,000YesYesNo
Cy5.5Cyanine 5.5632.7421,500YesYesYes
Cy5.5-NCyanine 5.5 NHS565.7821,500YesYesYes
Cy5-DBCOCyanine5 DBCO783.0710,000YesYesYes
Cy5-MalCyanine 5 Maleimide604.7910,000YesYesYes
Cy5-NCyanine 5 NHS, N-methyl464.6510,000YesYesYes
Cyan5-NAlternative for Quasar 670, N-ethyl of Cy5 and 3Cy5479.6910,000YesYesYes
Dabcyl-dTDabcyl-dT709.7029,100YesNoNo
Dabsyl-dTDabsyl-dT591.5329,100YesNoNo
Dansyl-NDansyl NHS346.4412,935YesYesYes
dA-PMedA-P-Methyl phosphonate311.2415,400YesYesYes
dA-POMedA P-Omethyl327.2315,400YesYesYes
dAsdA dithiophosphate329.3415,400YesYesYes
DBCO-C4-NDBCO C4 NHS287.328,000YesYesYes
DBCO-C5-NDBCO-C5-NHS301.358,000YesYesYes
DBCO-C6-NDBCO C6 NHS315.378,000YesYesYes
DBCO-CONH-SS-NDBCO-CONH-S-S-NHS450.570YesYesYes
DBCO-dTDBCO-dT773.7818,800YesYesYes
DBCO-PEG12-NDBCO PEG12 NHS887.028,000YesYesYes
DBCO-PEG1-CH2CH2COONDBCO-PEG1-CH2CH2COON446.498,000YesYesYes
DBCO-PEG4-MalDBCO-PEG4-Mal674.758,000YesYesYes
DBCO-PEG4-NDBCO PEG4 NHS534.618,000YesYesYes
DBCO-PEG5-NDBCO PEG5 NHS578.658,000YesYesYes
DBCO-TEG5′ DBCO-TEG570.588,000YesNoNo
DCA-AmC7Docosanoic acid DCA amino C7 (1,3-diol)531.760NoNoYes
dC-PMedC-P-Methyl phosphonate287.217,400YesYesYes
dC-POMedC P-Omethyl303.217,400YesYesYes
dCsdC dithiophosphate305.317,400YesYesYes
ddAdideoxy A297.2115,400NoNoYes
ddCdideoxy C273.197,400NoNoYes
ddGdideoxy G313.2011,500NoNoYes
ddTdideoxy T288.198,700NoNoYes
deg-dKdK, purine based universal base with C and T358.257,700YesYesYes
DesthioBiotin-NDesthiobiotin-NHS196.250YesYesYes
DesthioBiotin-TEGDesthiobiotin TEG linker539.560YesYesYes
dG-PMedG-P-Methyl phosphonate327.2411,500YesYesYes
dG-POMedG P-OMethyl phosphoramidite343.2311,500YesYesYes
dGsdG dithiophosphate345.2711,500YesYesYes
DHADHA Acid310.490YesYesYes
DHA-AmC7DHA Docosahexaenoic acid modified AmC7(1,3-diol)519.650NoNoYes
dIDeoxy Inosine314.197,500YesYesYes
difC2′,2′-difluoro C325.167,200YesYesYes
Digoxigenin-NDigoxigenin NHS543.690YesYesYes
Dihydro-dU5,6-dihydro dU292.188,700YesYesYes
Dihydro-rU5,6-dihydro rU308.189,900YesYesYes
DiMe-mAN6,N6-Dimethyl mA371.2915,400YesYesYes
DiMe-rAN6,N6-Dimethyl rA357.2615,400YesYesYes
DIODivalent Linker (DIO) , same as Doubler-2330.270NoNoYes
Dithiol-SerinolDithiol Serinol Phosphoramidite (DTPA)412.460YesYesYes
dNebularineNebularine 2′-deoxy298.1915,400YesYesYes
DNP-TEGDNP-TEG509.410YesYesYes
DoublerSymmetric Doubler351.310YesYesYes
Doubler-1asymmetric doubler352.320YesYesYes
Doubler-2Glycerol TEG Doubler, same as DIO330.270YesYesYes
Doubler-3levulinyl based asymmetrical branching 154.060YesYesYes
Doubler-4glycerin based symmetrical branching154.060YesYesYes
dPdP, pyrimidine based universal base with G and A330.232,900YesYesYes
dSpdSpacer, Abasic180.100YesYesYes
DSPE-PEG-2000-NDSPE-PEG(2000) Carboxy NHS2,762.400YesYesYes
dT-PMedT-P-Methyl phosphonate302.238,700YesYesYes
dT-POMedT P-OMethyl318.228,700YesYesYes
dTsdT dithiophosphate320.328,700YesYesYes
dU2′ deoxy Uridine290.178,700YesYesYes
dU-PMedU-P-Methyl phosphonate288.238,700YesYesYes
dUphe5-(benzylamino)carbonyl dU423.329,900YesYesYes
dXdeoxy Xanthosine330.1911,500YesYesYes
dZ5-Nitro dC, Benner’s base334.180YesYesYes
EclipseEclipse Quencher537.896,600YesYesYes
EPAEicosapentaenoic acid284.440YesYesYes
ex-fU5′-CH2 extended fU322.169,900YesYesYes
ex-mU5′-CH2 extended mU334.239,900YesYesYes
fAfA331.2015,400YesYesYes
FAM-dTFAM dT815.717,100YesYesYes
FANA-A2′-F-Arabino A331.2015,400YesYesYes
FANA-C2′-F-Arabino C307.177,200YesYesYes
FANA-G2′-F-Arabino G347.2011,500YesYesYes
FANA-I2′-F-Arabino I332.187,500YesYesYes
FANA-T2′-F-Arabino T322.199,900YesYesYes
FANA-U2′-F-Arabino U308.169,900YesYesYes
FaricimabFaricimab antibody146,160.000YesYesYes
fAsfA dithiophosphate347.2615,400YesYesYes
fCfC307.177,200YesYesYes
fCsfC dithiophosphate323.247,200YesYesYes
Ferrocene-dTFerrocene-dT684.458,700YesYesYes
Ferrocene-NFerrocene NHS212.030YesYesYes
fGfG347.2011,500YesYesYes
fGsfG dithiophosphate363.2611,500YesYesYes
fI2′-F inosine332.197,500YesYesYes
Fluor-dTFluorescein-dT816.7121,800YesYesYes
FITCfluorescein isothiocyanate389.3813,700YesYesYes
Folate-NFolate NHS423.400YesYesYes
fTfT322.189,900YesYesYes
fUfU308.169,900YesYesYes
fUsfU dithiophosphate324.229,900YesYesYes
GalNAc-1TriGalNAc C12 linker1,819.920NoNoYes
GalNAc-10TriGalNAc PEG5 NHS1,717.920YesNoYes
GalNAc-12TriGalNAc C5 linker ended with amine10,000.000YesYesYes
GalNAc-13Lysine based TriGalnac with cyclohexane linker1,335.300YesNoNo
GalNAc-14TriGalNAc C11 linker with internal amide at position 41,526.740YesNoNo
GalNAc-3Lysine based TriGalNAc carboxylic acid1,436.530YesYesYes
GalNAc-5TriGalNAc C12 Pyrrolidine, L961,788.980YesYesYes
GalNAc-6Lysine based TriGalNAc with serinol linker1,660.670YesYesYes
GalNAc-7Lysine based TriGalNAc with Amine C7(1,3-diol) linker1,645.700YesYesYes
GalNAc-8Lysine based TriGalNAc (GalNAc-3) conjugated to C6NH21,615.680YesNoNo
GalNAc-9TriGalNAc C12 NHS1,609.880YesYesYes
GL2-400GS22arm branched PEG NHS, MW 40,00040,000.000YesYesYes
GNA-AGNA-A271.1715,400YesYesYes
GNA-CGNA-C247.157,200YesYesYes
GNA-GGNA-G287.1711,500YesYesYes
GNA-TGNA-T262.168,700YesYesYes
GNA-UGNA-U248.139,900YesYesYes
hnaAHNA A263.2615,400YesYesYes
hnaCHNA C239.237,200YesYesYes
hnaGHNA G279.2611,500YesYesYes
hnaTHNA T254.248,700YesYesYes
HEX5′-Hexachloro-Fluorescein with C6 linker744.1331,600YesNoNo
HEX-dT(SIMA)HEX-dT1,037.7938,800YesYesYes
Hexynyl5′ Hexynyl, alkynl160.110YesNoNo
Int-6FAM6-Fluorescein with 1,3-diol linker567.1322,500YesYesYes
Int-BHQ-3Internal BHQ-3597.6213,000YesYesYes
Int-BiotinBiotin with AmC7(1,3-diol) linker435.480YesYesYes
Int-FluoresceinFluoresceinwith thiourea AmC7 (1,3-diol) linker, same as 3′-Fluorescein598.5620,900YesYesYes
InvAbInverted dSpacer, inverted abasic180.100YesYesYes
Inv-dAInverted dA313.2115,400YesYesYes
Inv-dCInverted dC289.187,400YesYesYes
Inv-dGInverted dG329.2111,500YesYesYes
Inv-dTInverted dT304.208,700YesYesYes
Inv-fAInverted fA331.2015,400YesYesYes
Inv-fCInverted fC307.187,200YesYesYes
Inv-fGInverted fG347.2011,500YesYesYes
Inv-fUInverted fU308.169,900YesYesYes
Inv-mAInverted mA343.2415,400YesYesYes
Inv-mCInverted mC319.217,200YesYesYes
Inv-mGInverted mG359.2311,500YesYesYes
Inv-mUInverted mU320.199,900YesYesYes
Inv-moeAInverted moeA387.2915,400YesYesYes
Inv-5Me-moeCInverted 5-Me moeC377.297,200YesYesYes
Inv-moeGInverted moeG403.2911,500YesYesYes
Inv-moeTInverted moeT378.279,900YesYesYes
Inv-rAInverted rA329.2115,400YesYesYes
Inv-rCInverted rC305.187,200YesYesYes
Inv-rGInverted rG345.2111,500YesYesYes
Inv-rUInverted rU306.179,900YesYesYes
IRDye680RD-NIRDye 680 RD NHS844.4123,100YesYesYes
IRDye700IRDye 700752.90187,000YesNoNo
IRDye700-NIRdye 700 DX NHS1,751.2121,450YesYesYes
IRDye800IRDye 800800.0018,000YesNoNo
IRDye800CW-MalIRDye 800 CW-Mal1,125.3118,000YesYesYes
IRDye800CW-NIRDye 800 CW-N985.1718,000YesYesYes
IRDyeQC-1-NIRDye QC-11,063.7316,800YesYesYes
isodCiso-dC289.187,400YesYesYes
isodGiso-dG329.2111,500YesYesYes
iso-GNA-Aiso-GNA-A271.1715,400NoYesYes
iso-GNA-Ciso-GNA-C247.157,200YesYesYes
iso-GNA-Giso-GNA-G287.1711,500YesYesYes
iso-GNA-Tiso-GNA-T262.168,700YesYesYes
JOE5′ Dichloro-dimethoxy-Fluorescein II with C6 linker666.4020,100YesNoNo
L-dAL-dA, opposite to D configuration313.2115,400YesYesYes
L-dCL-dC, opposite to D configuration289.187,400YesYesYes
L-dGL-dG, opposite to D configuration329.2111,500YesYesYes
L-dTL-dT, opposite to D configuration304.198,700YesYesYes
LNA-ALNA-A341.2215,400YesYesYes
LNA-GLNA-G357.2211,500YesYesYes
LNA-TLNA-T332.209,900YesYesYes
LNA-TsLNA T dithiophosphate348.279,900YesYesYes
L-rAL-rA, opposite to D configuration329.2115,400YesYesYes
L-rCL-rC, opposite to D configuration305.187,200YesYesYes
L-rGL-rG, opposite to D configuration345.2111,500YesYesYes
L-rUL-rU, opposite to D configuration306.179,900YesYesYes
Lumi804-Eu-NLumi804-Eu-NHS1,177.9521,000YesYesYes
mAmA343.2415,400YesYesYes
mAbasic2′-OMe Abasic210.130YesYesYes
Mal-C2-NMaleimidoacetic acid NHS137.090YesYesYes
Mal-C4-N4-Maleimido butyric acid NHS; GMBS165.150YesYesYes
Mal-C6-NMal-C6-NHS193.200YesYesYes
Mal-PEG2-NMal-PEG2-NHS239.230YesYesYes
Mal-PEG3-NMal-PEG3-NHS283.280YesYesYes
Mal-PEG3-N3Azido-PEG3-Maleimide369.380YesYesYes
Mal-PEG4-NMaleimide PEG4 NHS327.330YesYesYes
Mal-PEG5-NMal-PEG5-NHS371.390YesYesYes
Mal-propionic-N3-Maleimido-propionic NHS151.120YesYesYes
mana-A2′-OMe arabinose A343.2415,400YesYesYes
mana-C2′-OMe arabinose C319.217,200YesYesYes
mana-G2′-OMe arabinose G359.2311,500YesYesYes
mana-U2′-OMe arabinose U320.199,900YesYesYes
mA-PMemA P-methyl phosphonate341.2615,400YesYesYes
mAsmA dithiophosphate359.3015,400YesYesYes
MB-NMethylene Blue NHS323.4110,300YesYesYes
MBSm-maleimidobenzoyl NHS199.170YesYesYes
mCmC319.217,200YesYesYes
mC-PMemC P-methyl phosphonate317.247,200YesYesYes
mCsmC dithiophosphate335.277,200YesYesYes
MC-Val-Cit-PAB-PNPMC-Val-Cit-PAB-PNP598.660YesYesYes
mDAP2′-OMe 2,6-diamino purine358.2515,400YesYesYes
Me-5VPmUsmonomethyl on phosphate 5’VP mU dithiophosphate426.279,900YesNoNo
Me-PEG4Methyl-dPEG4218.250YesYesYes
Me-TetrazineMethyltetrazine PEG4418.450YesYesYes
Methacrylate-NMethacrylic acid NHS68.080YesYesYes
mGmG359.2311,500YesYesYes
MGB-BQ23’MGB-BHQ21,250.2845,900NoNoYes
MGB-EQMGB Eclipse1,120.5653,500NoNoYes
mG-PMemG P-methyl phosphonate357.2611,500YesYesYes
mG-POEtmG P-Ethoxy387.2911,500YesYesYes
mGsmG dithiophosphate375.3011,500YesYesYes
mI2′-OMe-Inosine344.227,500YesYesYes
moeAMOE-A387.2915,400YesYesYes
moeDAP2′-moe 2,6-diamino purine402.3015,400YesYesYes
moeGMOE-G403.2911,500YesYesYes
moeI2′-MOE- inosine388.277,500YesYesYes
moeTMOE-T378.279,900YesYesYes
moeUMOE-U364.259,900YesYesYes
MSD-TagMSD Ruthenium-based tag with C4 NHS651.7311,670YesYesYes
mTmT334.229,900YesYesYes
mTsmT dithiophosphate350.289,900YesYesYes
mUmU320.199,900YesYesYes
mU-PMemU P-methyl phosphonate318.229,900YesYesYes
mUsmU dithiophosphate336.259,900YesYesYes
N1-Me-dAN1-Me dA327.2415,400YesYesYes
N1-Me-rAN1-Me-A343.2415,400YesYesYes
N2-Me-dGN2-Me dG343.2411,500YesYesYes
N3-CNEt-mUN3-cyanoethyl mU373.269,900YesYesYes
N3dUN3 pseudo dU, N3 iso dU290.178,700YesYesYes
N3-Me-CN3-Methyl-C319.2110,000YesYesYes
N3-Me-dTN3-Me thymidine318.228,700YesYesYes
N6-Me-dAN6-Me-dA327.2415,400YesYesYes
N6-Me-rAN6-Me-rA343.2415,400YesYesYes
NED5′ NED708.8469,000YesNoNo
NH2-PEG12-COFmoc-N-amido-dPEG-TFP ester599.720YesYesYes
NH2-PEG24-NFmoc-PEG24-NHS1,128.350YesYesYes
nmaA2′-O NMA A400.2915,400YesYesYes
nmaG2′-O NMA G416.2911,500YesYesYes
nmaT2′-O NMA T391.279,900YesYesYes
O6-Me-dGO6-Me-dG343.2411,500YesYesYes
OleicOleic acid with AmC7(linear) linker443.610YesNoNo
Oleic-NOleic acid NHS264.450YesYesYes
Palm-NPalmitate NHS238.420YesYesYes
PC-AmPC Amino-Modifier371.330YesYesNo
PC-azidePC azide NHS525.520YesYesYes
PC-BiotinPC Biotin597.620YesNoYes
PC-Biotin-NPC Biotin NHS725.810YesYesYes
PC-DCA-AmC7Phosphatidylcholine (PC) DCA with AmC7(1,3-diol) linker783.970NoNoYes
PC-LinkerPC Linker259.150YesYesYes
pdC5-Propynyl dC327.237,400YesYesYes
pdU5-Propynyl dU328.228,700YesYesYes
PEG5K-MalPEG5K maleimide5,000.000YesYesYes
PhosPhosphate79.980YesNoYes
PMO-AMorpholino-A339.3015,400YesYesYes
PMO-CMorpholino-C315.277,200YesYesYes
PMO-GMorpholino-G355.2911,500YesYesYes
PMO-TMorpholino-T330.289,900YesYesYes
PPDiphosphate159.960YesNoNo
PPPTriphosphate239.940YesNoNo
Propargyl-PEG1-NPropargyl-PEG1-NHS, fragment of Alkyne110.110YesYesYes
Psd-dUpseudo dU290.178,700YesYesYes
Psd-rUPseudo ribo Uridine306.179,900YesYesYes
r2amP2-aminopurine 2′-OH329.2115,400YesYesYes
rArA329.2115,400YesYesYes
RanibizumabVEGF-A antagonist48,350.000YesYesYes
rAsrA dithiophosphate345.2715,400YesYesYes
rCrC305.187,200YesYesYes
rCsrC dithiophosphate321.247,200YesYesYes
rDAP2,6-diamino purine, 2′-OH344.2215,400YesYesYes
rGrG345.2111,500YesYesYes
rGsrG dithiophosphate361.2711,500YesYesYes
rIribo Inosine330.197,500YesYesYes
rUrU306.179,900YesYesYes
rUsrU dithiophosphate322.239,900YesYesYes
s-Cy5-NSulfo-Cy5 NHS623.7635,230YesYesYes
SIMASIMA, spectrascopically identical to HEX758.5431,600YesNoNo
SMCCSMCC-Mal NHS219.240YesYesYes
SMPTSMPT, 4-succinimidyloxycarbonyl-alpha-methyl-alpha(2-pyridyldithio)toluene273.370YesYesYes
Sp12TetraEthyloxy Glycol(TEG) Spacer256.190YesYesYes
Sp18Spacer 18344.300YesYesYes
Sp9Spacer 9212.140YesYesYes
SpC12Spacer C12264.300YesYesYes
SpC3Propane diol, C3 Spacer138.060YesYesYes
SpC4Butane diol, C4 Spacer152.090YesYesYes
SpC6Hexane diol, spacer C6180.140YesYesYes
SpC9Nonane diol, spacer C9222.220YesYesYes
SPDB-NSPDB NHS211.300YesYesYes
SPDP-NSPDP NHS197.270YesYesYes
SpPCPC Spacer344.260YesYesYes
StearylStearyl, C18332.460YesYesYes
TAMRATAMRA with AmC7(1,3-diol) linker621.6329,100YesNoNo
TAMRA-dTTAMRA-dT870.850YesYesYes
TAMRA-NTAMRA-NHS412.4529,100YesYesYes
tCotricyclic, 1,3-Diaza-2-Oxophenoxazine379.2611,000YesYesYes
tC-nitrotricyclic nitro440.320YesYesYes
TCO-NTCO NHS152.190YesYesYes
TCO-PEG12-NTCO PEG12 NHS751.910YesYesYes
TCO-PEG4-NTCO PEG4 NHS399.480YesYesYes
TEG-CholCholesteryl-TEG 3/5DMT755.970YesYesYes
TET5′ Tetrachloro-Fluorescein674.2216,300YesNoNo
Tetrazine-PEG5-NTetrazine PEG5 NHS489.530YesYesYes
Tetrazin-NTetrazine NHS198.190YesYesYes
TexasRed-NTexas Red NHS701.8514,400YesYesYes
Thiol-C3-SHThiol C3154.120YesYesYes
Thiol-C3-S-SThiol C3 disulfide244.260YesYesYes
Thiol-C6-dTThiol modifier C6 dT546.538,700YesYesYes
Thiol-C6-SHThiol Modifier C6 SH196.200YesYesYes
Thiol-C6-S-SThiol Modifier C6 S-S328.420YesYesYes
tmbtm-A2’O TMBTM A555.5015,400YesYesYes
tmbtm-C2’O TMBTM C531.477,200YesYesYes
tmbtm-G2’O TMBTM G571.5011,500YesYesYes
tmbtm-U2’O TMBTM U532.469,900YesYesYes
TNA-ATNA A299.1815,400YesYesYes
TNA-CTNA C275.167,400YesYesYes
TNA-GTNA G315.1811,500YesYesYes
TNA-TTNA T290.178,700YesYesYes
TNA-U-BzTNA U Bz395.269,900YesYesYes
Tocopherol-TEGTocopherol-TEG 3/5DMT698.920YesYesYes
T-POEtdT P-ethoxy332.258,700YesYesYes
Trebler-lTrebler long arm430.430YesYesYes
Trebler-sTrebler short arm372.350YesYesYes
UNA-AUNA-A331.2215,400YesYesYes
UNA-CUNA-C307.207,200YesYesYes
UNA-GUNA-G347.2211,500YesYesYes
UNA-UUNA-U308.189,900YesYesYes
Val-Cit-PAB-PNPFmoc Val-Cit-PAB-PNP405.460YesYesYes
VICVIC745.9097,000YesYesYes
VIC-NVIC NHS537.7397,000YesYesYes
Yakima-YellowYakima Yellow717.3123,700YesNoYes
ZSpermine408.520YesYesYes

Trademarks & Disclaimers:

All product and brand names mentioned are trademarks or registered trademarks of their respective holders. Use of them does not imply any affiliation with or endorsement by them.
Alexa Fluor® dyes are registered trademarks of Molecular Probes, Inc.
ATTO™ Dyes are registered trademarks of ATTO Technology Inc.
Black Hole Quencher®, BHQ-1®, BHQ-2®, BHQ-dT®,and Quasar® are registered trademarks of Biosearch Technologies, Inc.
Cy3®, Cy5®, and Cy5.5® are registered trademarks of GE Healthcare.
FAM™, HEX™, ROX™, TAMRA™, JOE™, NED™ and VIC™ are trademarks of Applied Biosystems, a brand of Thermo Fisher Scientific.
LNA® is registered trademark of Exiqon A/S.
MGB™ is a trademark of Epoch Biosciences.
IRDye is a registered trademark of Li-COR Biosciences.
Eclipse™ Quencher and Super T are registered trademarks of ElitechGroup, Inc.
SNAP-tag® is a registered trademark of New England Biolabs, Inc
HaloTag® is a registered trademark of Promega Corporation.
Acrydite® is a registered trademark of Mosaic Technologies Corp.
MSD Tag® is a registered trademark of Meso Scale Diagnostics LLC.

Notes:

  • All codes need to be in a parenthesis, except A, C, G, T (for DNA), rA, rC, rG, rU (for RNA), mA, mC, mG, mU (for 2′-OMe), and fA, fC, fG, fU (for 2′-F). For example: (LNA-A)AmC fGrU(dU) (mT)*(moeA)(cetG) (FANA-C)(GNA-A)(fAs)* (5Me-dC)(G-Mesyl)A
  • The default backbone linkage between two modification codes is phosphodiester, except * for phosphorothioate and dithiophosphate, e.g., GCT (dAs)*C*G* TCA and ^ for linkage made by post-synthesis conjugation, e.g., (TCO-N)^(C6NH2)A CGT.
  • This table never includes Customer proprietary codes. If you are the owner of a code, feel free to use it in the sequence.
  • New Mod is added regularly. If you don’t see the Mod code you need, please let us know by email at oligosales@synoligo.com.

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