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Oligo Mod List

Synoligo CodeDescriptionFormula WeightExtinction Coefficient5′ ModInternal Mod3′ Mod
-MesylA suffix used together with other code indicating a mesyl phosphoramidate backbone, e.g., dA-Mesyl76.990YesYesNo
-PN1A suffix used together with other code indicating a guanidine-based backbone, e.g., dA-PN195.080YesYesNo
1Me-psd-rUN1-methyl pseudo ribo uridine320.198,100YesYesYes
20kDa-PEGPEG 20K NHS20,000.000YesYesYes
2’5’dA3′-deoxy A313.2115,400YesYesYes
2’5’dC3′-deoxy C289.187,400YesYesYes
2’5’dG3′-deoxy G329.2111,500YesYesYes
2’5’dT3′-deoxy T304.208,700YesYesYes
2’5’rA3′-ribo A329.2115,400YesYesYes
2’5’rC3′-ribo C305.187,200YesYesYes
2’5’rG3′-ribo G345.2111,500YesYesYes
2’5’rU3′-ribo U306.179,900YesYesYes
2NH2-rA2′-amino A328.2215,400YesYesYes
2NH2-rC2′-amino C304.207,200YesYesYes
2NH2-rG2′-amino G344.2211,500YesYesYes
2NH2-rU2′-amino U305.189,900YesYesYes
2’O-C16-A2′-O-Hexadecyl A553.6415,400YesYesYes
2’O-C16-C2′-O-Hexadecyl C529.617,200YesYesYes
2’O-C16-G2′-O-Hexadecyl G569.6411,500YesYesYes
2’O-C16-U2′-O-Hexadecyl U530.609,900YesYesYes
2’O-C22-A2′-O-C22 A637.8015,400YesYesYes
2’O-C22-C2′-O-C22 C613.787,200YesYesYes
2’O-C22-G2′-O-C22 G653.8011,500YesYesYes
2’O-C22-U2′-O-C22 U614.769,900YesYesYes
2’O-C3NH2-A2′-O-aminopropyl A386.3015,400YesYesYes
2’O-C3NH2-C2′-O-aminopropyl C362.287,200YesYesYes
2’O-C3NH2-G2′-O-aminopropyl G402.3011,500YesYesYes
2’O-C3NH2-U2′-O-aminopropyl U363.269,900YesYesYes
2’O-prg-A2′-O-propargyl A367.2615,400YesYesYes
2’O-prg-C2′-O-propargyl C343.237,200YesYesYes
2’O-prg-G2′-O-propargyl G383.2611,500YesYesYes
2’O-prg-U2′-O-propargyl U344.219,900YesYesYes
3′-6FAM3′ (6-FAM) Fluorescein with 1,3-diol linker, same as Int-FAM566.4821,000NoNoYes
3’AmC33′ amino C3 modifier153.070NoNoYes
3’Azide-PyC43′ Azide Pyrrolidine C4290.210NoNoYes
3Biotin3′ Biotin with glycerin linker437.440NoNoYes
3Cy33′ Cyanine 3 , same as Cy3507.594,930NoNoYes
3Cy55′ Cyanine 5, same as Cy5533.6310,000NoNoYes
3Dabcyl3′ Dabcyl 462.4411,100NoNoYes
3-deaza-3-Me-dA3-deaza-3-Me deoxy A326.2515,400YesYesYes
3Ferrocene3′ Ferrocene 395.170NoNoYes
3′-Fluorescein3′ Fluorescein with thiourea AmC7 (1,3-diol) linker, same as Int-Fluorescein598.5621,000NoNoYes
3Hexynyl3′ Hexynyl, alkynl369.290NoNoYes
3MGBCDPI3 MGB 831.8737,900NoNoYes
3’NH2-dA3′-amino-2′-deoxy A10,000.0015,400YesYesYes
3’NH2-dC3′-amino-2′-deoxy C10,000.007,400YesYesYes
3’NH2-dG3′-amino-2′-deoxy G10,000.0011,500YesYesYes
3’NH2-dT3′-amino-2′-deoxy T10,000.008,700YesYesYes
3Nitro-Pyrrole2′-deoxy 3-nitropyrrole290.177,700YesYesYes
3Palm3′ Palmitate-AmC7 (1,3-diol based)447.600NoNoYes
3’prg-5MedC3′-Propargyl-2′-deoxy 5-Me C341.267,400NoNoYes
3PuromycinPuromycin 533.4815,400NoNoYes
3’thio-dI3′-Thio-2′-deoxy Inosine330.267,500YesYesYes
40kDa-PEG40kDa Y arm NHS ester40,000.000YesYesYes
40kDa-PEG-F40kDa Forked arm NHS ester40,000.000YesYesYes
4-Cl-3-TFMP-Isocyanate4-chloro-3-trifluoromethylphenyl isocyanate221.560YesYesYes
4thio-dT4-Thio 2′-deoxy T320.268,700YesYesYes
4thio-dU4-Thio 2′-deoxy U306.238,700YesYesYes
4thio-rU4-Thio ribo U322.229,900YesYesYes
5-6ROX-N5- and 6-ROX NHS ester516.5822,600YesYesYes
5AcryditeAcrydite (Methacrylate C6)247.230YesNoNo
5’AmC35′ amino-C3 modifier137.080YesNoNo
5’BHQ-15′ BHQ-1538.498,000YesNoNo
5’BHQ-25′ BHQ-2540.478,000YesNoNo
5Biotin5′ Biotin C6 linker405.450YesNoNo
5Br-dC5-Br-deoxy C368.087,400YesYesYes
5Br-dU5-Br-deoxy U369.078,700YesYesYes
5Carboxy-dC5-carboxy-deoxy C333.197,400YesYesYes
5Chol-PEG5′ Cholesterol Penta ethylene glycol10,000.000YesNoNo
5Chol-TEG5′ Cholesterol tetra ethylene glycol681.900YesNoNo
5Dabcyl5′ Dabcyl430.1811,100YesNoNo
5Ethynyl-dU5-Ethynyl-deoxy U314.198,700YesYesYes
5Ethynyl-rU5-Ethynyl-ribo U330.199,900YesYesYes
5F-dC5-F deoxy C307.188,700YesYesYes
5F-dU5-F-deoxy U308.168,700YesYesYes
5Formyl-dC5-Formyl-deoxy C317.197,400YesYesYes
5F-rU5-F-ribo U324.169,900YesYesYes
5Hydroxy-dU5-OH-deoxy U306.178,700YesYesYes
5Hydroxymethyl-dC5-Hydroxymethyl deoxy C319.217,400YesYesYes
5I-dC5-I-deoxy C415.087,400YesYesYes
5I-dT5-I deoxy T414.098,700YesYesYes
5I-dU5-I deoxy U416.078,700YesYesYes
5’Mal5′ Maleimide Modifier (Diels-AlderProtected Form)299.220YesNoNo
5Me-BNA-C2′,4′-BNA 5-methyl C360.267,200YesYesYes
5Me-cetCcEt 5-methyl C345.257,200YesYesYes
5Me-dC5-Me-deoxy C303.217,400YesYesYes
5Me-dCs5-Me-deoxy C dithiophosphate319.277,400YesYesYes
5Me-dZebularine5-Me-2′-deoxyZebularine288.197,400YesYesYes
5Me-LNA-CLNA-5-methyl C331.227,200YesYesYes
5Me-mC5-Me-mC333.247,200YesYesYes
5Me-moeC5-Me-moeC377.297,200YesYesYes
5Me-rC5-Me-rC319.217,200YesYesYes
5Me-rU5-Me-rU320.199,900YesYesYes
5MGB5′-CDPI3 MGB872.9637,900YesNoNo
5’N3-dT5′-azido-dT329.098,700YesNoNo
5’NH2-Acrylate-mG5′-amino-mG, acrylate adduct0.0011,500YesYesYes
5’NH2-mG5′-Amino mG359.2611,500YesYesYes
5Nitro-indole2′-deoxy-5-Nitroindole340.230YesYesYes
5Oct-dUC8-Alkyne-dU, 5-Octadiynyl dU394.328,700YesYesYes
5OHbutynl-dUSuper T, 5-hydroxybutynl-2′-deoxy U358.243,800YesYesYes
5’OMe-dT5′-O-Me dT318.2215,400YesNoNo
5Palm5′-Palmitate with C6 linker417.560YesNoNo
5-propar-dU5-Propargyloxy dU344.218,700YesYesYes
5’rAPP5′ Adenylation410.2015,400YesNoNo
5TauMe-2Thio-rU5-taurinomethyl-2-thio rU559.559,900YesYesYes
5VIC5′ VIC with C6 linker716.8997,000YesNoNo
5VPfU5′-VP-2′-F U384.159,900YesNoNo
5VPmA5′-VP-mA419.2215,400YesNoNo
5VPmC5′-VP-mC395.207,200YesNoNo
5VPmG5′-VP-mG435.2211,500YesNoNo
5VPmoeT5′-VP-moe T454.269,900YesNoNo
5VPmU5′-VP-mU396.199,900YesNoNo
5VPrU5′-VP-rU355.199,900YesNoNo
5VPTnam5′-VP-Tnam10,000.008,700YesNoNo
6-Aza-dU6-Aza-dU291.168,700YesYesYes
6-FAM5′ Fluorescein with C6 linker537.4620,960NoNoYes
6FAM-N6FAM NHS358.3020,960YesYesYes
6FAM-Serinol6-Fluorescein with Serinol linker569.4620,900YesYesYes
6-HEX-N6-HEX NHS564.9731,600YesYesYes
6-ROX-Mal6-ROX-C2-Maleimide656.7322,600YesYesYes
6thio-dG6-Thiol-dG345.2611,500YesYesYes
6thio-rG6-Thio-rG361.2611,500YesYesYes
7-amido-7-deaza-dG7-amido-7-deaza-dG371.2411,500YesYesYes
7-de-8-aza-dG7-Deaza-8-aza-dG329.2011,500YesYesYes
7-deaza-7-Me-dG7-deaza-7-Me-dG342.2411,500YesYesYes
7-de-dG7-deaza-dG328.220YesYesYes
8-amino-dG8-amino dG344.220YesYesYes
8-Aza-NB8-Azanebularine315.1815,400YesYesYes
8-Oxo-dA8-Oxo-dA329.2115,400YesYesYes
8-Oxo-dG8-Oxo-dG345.2111,500YesYesYes
Abasic-IIDNA abasic, mixture of alpha and beta anomer196.100YesYesYes
Acrylate-NAcrylic Acid NHS54.050YesYesYes
AF350Alexa Fluor 350 NHS295.264,750YesYesYes
AF350-MalAF 350 MAL477.494,750YesYesYes
AF405Alexa Fluor 405 NHS609.607,820YesYesYes
AF488Alexa Fluor 488 NHS516.4521,300YesYesYes
AF488-MalAlexa Fluor 488 C5 Maleimide697.6621,300YesYesYes
AF514Alexa Fluore 514598.9024,800YesYesYes
AF532Alexa Fluor 532 NHS608.6819,440YesYesYes
AF546Alexa Fluor 546 NHS943.3223,520YesYesYes
AF555Alexa Fluor 555 NHS815.8012,000YesYesYes
AF568Alexa Fluor 568 NHS676.7141,085YesYesYes
AF594Alexa Fluor 594 NHS704.7638,700YesYesYes
AF610-XAlexa Fluor 610-X NHS967.3556,760YesYesYes
AF633NAlexa Fluor 633 NHS907.300YesYesYes
AF647Alexa Fluor 647840.990YesYesYes
AF647-MalAlexa Fluor 647 Maleimide982.130YesYesYes
AF660Alexa Fluor 660 NHS763.000YesYesYes
AF680Alexa Fluor 680 NHS844.000YesYesYes
AF700Alexa Fluor 700 NHS970.790YesYesYes
AF750Alexa Fluore 750867.300YesYesYes
AF750-MalAlexa Fluor 750 C5 Maleimide1,054.210YesYesYes
Alkyne-PEG5-NAlkyne-PEG5 NHS286.320YesYesYes
Am55′ Amino Modifier 5, C2-O-C2 version167.100YesNoNo
Am7Amino modifier 7, C3-O-Glycerin version211.150YesYesYes
AmC12Amino Modifier C12263.320YesNoNo
AmC2-dTAmino Modifier C2 dT402.308,700YesYesYes
AmC6-dAAmino-Modifier C6 dA427.4015,400YesYesYes
AmC6-dCAmino-Modifier C6 dC457.427,400YesYesYes
AmC6-dGN2-Amino-Modifier C6 dG428.3811,500YesYesYes
AmC6-dTAmino-modifier C6 dT458.418,700YesYesYes
AmC6-rUAmino-Modifier C6 rU474.409,900YesYesYes
AmC7Amino-Modifier C7, 1,3-diol version209.180YesYesYes
AmTEG5′ Amino modifier TEG255.210YesNoNo
araAarabinose A329.2115,400YesYesYes
araCarabinose C305.187,200YesYesYes
araGarabinose G345.2111,500YesYesYes
ATTO390-NATTO 390 NHS326.4111,040YesYesYes
ATTO425-NATTO 425 NHS383.4012,150YesYesYes
ATTO430LS-NATTO 430LS NHS548.7013,120YesYesYes
ATTO465-NATTO 465 NHS279.3481,750YesYesYes
ATTO488-NATTO 488 NHS572.5919,800YesYesYes
ATTO488-N3ATTO 488 azide789.0019,800YesYesYes
ATTO490LS-NATTO 490LS NHS655.8014,800YesYesYes
ATTO514-NATTO 514 NHS736.6424,150YesYesYes
ATTO520-NATTO 520 NHS348.5044,000YesYesYes
ATTO532-NATTO 532 NHS627.6923,000YesYesYes
ATTO542-NATTO 542 NHS893.0021,600YesYesYes
ATTO550-NATTO 550 NHS575.8027,600YesYesYes
ATTO565-NATTO 565 NHS492.5632,400YesYesYes
ATTO565-N3ATTO 565 azide710.0032,400YesYesYes
ATTO575Q-NATTO 575Q NHS592.0034,800YesYesYes
ATTO590-NATTO 590 NHS572.7050,400YesYesYes
ATTO594-NATTO 594 NHS787.9031,200YesYesYes
ATTO610-NATTO 610 NHS372.504,500YesYesYes
ATTO620-NATTO 620 NHS494.654,800YesYesYes
ATTO633-NATTO 633 NHS533.706,500YesYesYes
ATTO643-NATTO 643 NHS815.007,500YesYesYes
ATTO647-NATTO 647N NHS628.896,000YesYesYes
ATTO655-NATTO 655 NHS509.6030,000YesYesYes
ATTO665-NATTO 665 NHS604.9111,200YesYesYes
ATTO700-NATTO 700 NHS547.7031,200YesYesYes
ATTO740-NATTO 740 NHS448.568,400YesYesYes
ATTO-MB2-MalATTO Methlyene Blue2 maleimide477.5010,300YesYesYes
ATTO-MB2-NATTO Methlyene Blue2 NHS338.450YesYesYes
ATTO-Rho101-NATTO Rho 101 NHS571.9821,600YesYesYes
ATTO-Rho11-NATTO Rho 11 NHS549.7031,200YesYesYes
ATTO-Rho13-NATTO Rho13, NHS626.9035,000YesYesYes
ATTO-Rho6G-NATTO Rho 6G NHS495.6025,300YesYesYes
AzBenAzobenzene375.320YesYesYes
Azido-C2-NAzidoacetic acid NHS83.050YesYesYes
Azido-C4-NAzido C4 NHS111.100YesYesYes
Azido-C6-NAzido C6 NHS139.150YesYesYes
Azido-PEG3-MalAzido-PEG3-Maleimide369.370YesYesYes
Azido-PEG3-NAzido-PEG3-NHS229.230YesYesYes
Azido-PEG4-NAzido PEG4 NHS273.280YesYesYes
BAButyric acid100.070YesNoNo
BCN5′ endo-BCN with C2-O-C2 linker343.320YesNoNo
BCN-Nendo-BCN-NHS176.210YesYesYes
BCN-PEG2-MalMal-NH-PEG2-BCN475.540YesYesYes
BCN-PEG2-Nendo-BCN-PEG2-NHS335.580YesYesYes
BCN-PEG3-Nendo-BCN-PEG3-NHS379.450YesYesYes
BG-GLA-NBG-GLA Snap-tag366.370YesYesYes
BHQ-13′ BHQ-1 and internal BHQ-1554.498,000YesYesYes
BHQ-1-dTBHQ-1 dT960.9317,650YesYesYes
BHQ-1-NBHQ-1 NHS486.528,000YesYesYes
BHQ-2BHQ-2556.478,000YesYesYes
BHQ-2-dTBHQ-2 dT962.9117,650YesYesYes
BHQ-3BHQ-3 597.6313,000YesYesYes
BHQ-3-DBCOBHQ-3 DBCO956.4013,000YesYesYes
BHQ-3-NBHQ-3 NHS528.6413,000YesYesYes
BiotinBBtert-butyl-benzoyl protected Biotin with glycerin linker10,000.000YesYesYes
Biotin-dTBiotin dT amdite684.708,700YesYesYes
Biotin-PEG3-NBiotin-PEG3-NHS429.530YesYesYes
Biotin-PEG4-NBiotin-PEG4-NHS473.580YesYesYes
BiotinTEGBiotinTEG569.610YesYesYes
Bis-PEG5-NNHS PEG5 NHS240.360YesYesYes
BNA-A2′,4′-BNA A370.2615,400YesYesYes
BNA-G2′,4′-BNA G386.2611,500YesYesYes
BNA-T2′,4′-BNA T361.259,900YesYesYes
C10-NDecanoic acid NHS155.140YesYesYes
C11Undecanyl10,000.000YesNoNo
C12-NLauric acid NHS183.170YesYesYes
C14Tetradecanyl10,000.000YesNoNo
C3NH25′ Amino-C3 Modifier137.080YesNoNo
C5-COOHCarboxy-Modifier C5180.100YesNoNo
C6NH2Aminohexyl, AmC6, Amino modifier C6179.160YesYesYes
C8Alkyne-dCC8-Alkyne-dC, 5-Octadiynyl dC393.337,400YesYesYes
C8Alkyne-dTC8-Alkyne-dT, 5-Octadiynyl dT394.328,700YesYesYes
Carboxy-C10-NCarboxy-Modifier C10 NHS232.210YesYesYes
Carboxy-dTCarboxy-dT360.228,700YesYesYes
cetAcEt-A355.2415,400YesYesYes
cetCcEt-C331.227,200YesYesYes
cetGcEt-G371.2411,500YesYesYes
cetTcEt-T346.239,900YesYesYes
cetUcEt-U332.209,900YesYesYes
Cl-C6-PEG4-NHCO-C3-NHaloTag NHS408.940YesYesYes
CNVK3-Cyanovinylcarbazole (CNVK)396.3311,300YesYesYes
C-POEtdC P-Ethoxy317.247,400YesYesYes
Cy3Cyanine 3 , same as 3Cy3507.594,930YesYesNo
Cy3B-MalCy3B Maleimide682.7810,400YesYesYes
Cy3B-NCy3B NHS542.6410,400YesYesYes
Cy5Cyanine 5, same as 3Cy5533.6310,000YesYesNo
Cy5.5Cyanine 5.5633.7421,500YesYesYes
Cy5.5-NCyanine 5.5 NHS565.7621,500YesYesYes
Cy5-DBCOCyanine5 DBCO784.0810,000YesYesYes
Cy5-MalCyanine 5 Maleimide604.7810,000YesYesYes
Cy5-NCyanine 5 NHS, N-methyl465.6510,000YesYesYes
Cyan5-NAlternative for Quasar 670, N-ethyl of Cy5 and 3Cy5479.6810,000YesYesYes
Dabcyl-dTDabcyl-dT709.7029,100YesNoNo
Dabsyl-dTDabsyl-dT591.5329,100YesNoNo
Dansyl-NDansyl NHS346.4412,935YesYesYes
dA-PMedA-P-Methyl phosphonate311.2415,400YesYesYes
dA-POMedA P-OMe327.2315,400YesYesYes
dAsdA dithiophosphate329.3415,400YesYesYes
DBCO-C4-NDBCO C4 NHS287.318,000YesYesYes
DBCO-C5-NDBCO-C5-NHS301.348,000YesYesYes
DBCO-C6-NDBCO C6 NHS315.368,000YesYesYes
DBCO-CONH-SS-NDBCO-CONH-S-S-NHS451.580YesYesYes
DBCO-dTDBCO-dT773.7718,800YesYesYes
DBCO-PEG12-NDBCO PEG12 NHS887.028,000YesYesYes
DBCO-PEG1-CH2CH2COONDBCO-PEG1-CH2CH2COON446.498,000YesYesYes
DBCO-PEG4-MalDBCO-PEG4-Mal674.758,000YesYesYes
DBCO-PEG4-NDBCO PEG4 NHS534.618,000YesYesYes
DBCO-PEG5-NDBCO PEG5 NHS578.658,000YesYesYes
DBCO-TEG5′ DBCO-TEG570.578,000YesNoNo
DCA-AmC7Docosanoic acid DCA amino C7 (1,3-diol)531.760NoNoYes
dC-PMedC-P-Methyl phosphonate287.217,400YesYesYes
dC-POMedC P-Omethyl303.217,400YesYesYes
dCsdC dithiophosphate305.317,400YesYesYes
ddAdideoxy A297.2115,400NoNoYes
ddCdideoxy C273.197,400NoNoYes
ddGdideoxy G313.2011,500NoNoYes
ddNdideoxy N292.9512,000NoNoYes
ddTdideoxy T288.198,700NoNoYes
deg-dKdK, purine based universal base with C and T358.257,700YesYesYes
DesthioBiotin-NDesthiobiotin-NHS196.260YesYesYes
DesthioBiotin-TEGDesthiobiotin TEG linker539.560YesYesYes
dG-PMedG-P-Methyl phosphonate327.2411,500YesYesYes
dG-POMedG P-OMethyl phosphoramidite343.2311,500YesYesYes
dGsdG dithiophosphate345.2711,500YesYesYes
DHADHA Acid310.490YesYesYes
DHA-AmC7DHA Docosahexaenoic acid modified AmC7(1,3-diol)519.650NoNoYes
dIDeoxy Inosine314.197,500YesYesYes
difC2′,2′-difluoro C325.167,200YesYesYes
Digoxigenin-NDigoxigenin NHS543.690YesYesYes
Dihydro-dU5,6-dihydro dU292.198,700YesYesYes
Dihydro-rU5,6-dihydro rU308.189,900YesYesYes
DiMe-mAN6,N6-Dimethyl mA371.2915,400YesYesYes
DiMe-rAN6,N6-Dimethyl rA357.2615,400YesYesYes
DIODivalent Linker (DIO) , same as Doubler-2329.260NoNoYes
Dithiol-SerinolDithiol Serinol Phosphoramidite (DTPA)412.460YesYesYes
dNebularineNebularine 2′-deoxy298.1915,400YesYesYes
DNP-TEGDNP-TEG509.410YesYesYes
DoublerSymmetric Doubler351.310YesYesYes
Doubler-1asymmetric doubler352.320YesYesYes
Doubler-2Glycerol TEG Doubler, same as DIO268.310YesYesYes
Doubler-3levulinyl based asymmetrical branching 10,000.000YesYesYes
Doubler-4glycerin based symmetrical branching10,000.000YesYesYes
dPdP, pyrimidine based universal base with G and A330.232,900YesYesYes
dSpdSpacer, Abasic180.100YesYesYes
DSPE-PEG-2000-NDSPE-PEG(2000) Carboxy NHS2,762.400YesYesYes
dT-PMedT-P-Methyl phosphonate302.238,700YesYesYes
dT-POMedT P-OMethyl318.228,700YesYesYes
dTsdT dithiophosphate320.328,700YesYesYes
dU2′ deoxy Uridine290.178,700YesYesYes
dUphe5-(benzylamino)carbonyl dU423.329,900YesYesYes
dXdeoxy Xanthosine330.1911,500YesYesYes
EclipseEclipse Quencher537.896,600YesYesYes
EPAEicosapentaenoic acid284.450YesYesYes
ex-fU5′-CH2 extended fU322.169,900YesYesYes
ex-mU5′-CH2 extended mU334.239,900YesYesYes
fAfA331.2015,400YesYesYes
FAM-dTFAM dT815.710YesYesYes
FANA-A2′-F-Arabino A331.2015,400YesYesYes
FANA-C2′-F-Arabino C307.177,200YesYesYes
FANA-G2′-F-Arabino G347.2011,500YesYesYes
FANA-I2′-F-Arabino I332.187,500YesYesYes
FANA-T2′-F-Arabino T322.189,900YesYesYes
FANA-U2′-F-Arabino U308.169,900YesYesYes
FaricimabFaricimab antibody146,160.000YesYesYes
fAsfA dithiophosphate347.2615,400YesYesYes
fCfC307.177,200YesYesYes
fCsfC dithiophosphate323.247,200YesYesYes
Ferrocene-dTFerrocene-dT684.458,700YesYesYes
Ferrocene-NFerrocene NHS212.020YesYesYes
fGfG347.2011,500YesYesYes
fGsfG dithiophosphate363.2611,500YesYesYes
fI2′-F inosine332.197,500YesYesYes
FITCfluorescein isothiocyanate389.3813,700YesYesYes
Folate-NFolate NHS423.400YesYesYes
fTfT322.189,900YesYesYes
fUfU308.169,900YesYesYes
fUsfU dithiophosphate324.229,900YesYesYes
GalNAc-1TriGalNAc C12 linker1,819.920NoNoYes
GalNAc-10TriGalNAc PEG5 NHS1,717.920YesNoYes
GalNAc-12TriGalNAc C5 linker ended with amine10,000.000YesYesYes
GalNAc-3Lysine based TriGalNAc carboxylic acid1,436.530YesYesYes
GalNAc-5TriGalNAc C12 Pyrrolidine, L961,788.980YesYesYes
GalNAc-6Lysine based TriGalNAc with serinol linker1,660.670YesYesYes
GalNAc-7Lysine based TriGalNAc with Amine C7(1,3-diol) linker1,645.700YesYesYes
GalNAc-8Lysine based TriGalNAc (GalNAc-3) conjugated to C6NH21,615.680YesNoNo
GalNAc-9TriGalNAc C12 NHS1,609.880YesYesYes
GL2-400GS22arm branched PEG NHS, MW 40,00040,000.000YesYesYes
GNA-AGNA-A271.1715,400YesYesYes
GNA-CGNA-C247.157,200YesYesYes
GNA-GGNA-G287.1711,500YesYesYes
GNA-TGNA-T262.168,700YesYesYes
GNA-UGNA-U248.139,900YesYesYes
HEX5′-Hexachloro-Fluorescein with C6 linker744.1331,600YesNoNo
HEX-dTHEX-dT1,037.7938,800YesYesYes
Hexynyl5′ Hexynyl, alkynl160.110YesNoNo
Int-6FAM6-Fluorescein with 1,3-diol linker566.4822,500YesYesYes
Int-BHQ-3Internal BHQ-3597.6213,000YesYesYes
Int-BiotinBiotin with AmC7(1,3-diol) linker435.480YesYesYes
Int-FluoresceinFluoresceinwith thiourea AmC7 (1,3-diol) linker, same as 3′-Fluorescein598.5620,900YesYesYes
InvAbInverted dSpacer, inverted abasic180.100YesYesYes
Inv-dAInverted dA313.2115,400YesYesYes
Inv-dCInverted dC289.187,400YesYesYes
Inv-dGInverted dG329.2111,500YesYesYes
Inv-dTInverted dT304.208,700YesYesYes
Inv-fAInverted fA331.2015,400YesYesYes
Inv-fCInverted fC307.187,200YesYesYes
Inv-fGInverted fG347.2011,500YesYesYes
Inv-fUInverted fU308.169,900YesYesYes
Inv-mAInverted mA343.2415,400YesYesYes
Inv-mCInverted mC319.217,200YesYesYes
Inv-mGInverted mG359.2411,500YesYesYes
Inv-mUInverted mU320.199,900YesYesYes
Inv-rAInverted rA329.2115,400YesYesYes
Inv-rCInverted rC305.187,200YesYesYes
Inv-rGInverted rG345.2111,500YesYesYes
Inv-rUInverted rU306.179,900YesYesYes
IRDye680RD-NIRDye 680 RD NHS844.4123,100YesYesYes
IRDye700IRDye 700752.90187,000YesNoNo
IRDye700-NIRdye 700 DX NHS1,751.2121,450YesYesYes
IRDye800IRDye 800800.0018,000YesNoNo
IRDye800CW-MalIRDye 800 CW-Mal1,125.3118,000YesYesYes
IRDye800CW-NIRDye 800 CW-N985.1718,000YesYesYes
IRDyeQC-1IRDye QC-11,063.7316,800YesYesYes
isodCiso-dC289.187,400YesYesYes
isodGiso-dG329.2111,500YesYesYes
iso-GNA-Aiso-GNA-A271.1715,400NoYesYes
iso-GNA-Ciso-GNA-C247.157,200YesYesYes
iso-GNA-Giso-GNA-G287.1711,500YesYesYes
iso-GNA-Tiso-GNA-T262.168,700YesYesYes
JOE5′ Dichloro-dimethoxy-Fluorescein II with C6 linker666.4020,100YesNoNo
L-dAL-dA, opposite to D configuration313.2115,400YesYesYes
L-dCL-dC, opposite to D configuration289.187,400YesYesYes
L-dGL-dG, opposite to D configuration329.2111,500YesYesYes
L-dTL-dT, opposite to D configuration304.198,700YesYesYes
LNA-ALNA-A341.2215,400YesYesYes
LNA-GLNA-G357.2211,500YesYesYes
LNA-TLNA-T332.209,900YesYesYes
LNA-TsLNA T dithiophosphate348.279,900YesYesYes
L-rAL-rA, opposite to D configuration329.2115,400YesYesYes
L-rCL-rC, opposite to D configuration305.187,200YesYesYes
L-rGL-rG, opposite to D configuration345.2111,500YesYesYes
L-rUL-rU, opposite to D configuration306.179,900YesYesYes
Lumi804-Eu-NLumi804-Eu-NHS1,177.9421,000YesYesYes
mAmA343.2415,400YesYesYes
Mal-C2-NMaleimidoacetic acid NHS137.100YesYesYes
Mal-C4-N4-Maleimido butyric acid NHS; GMBS165.150YesYesYes
Mal-C6-NMal-C6-NHS193.200YesYesYes
Mal-PEG2-NMal-PEG2-NHS311.310YesYesYes
Mal-PEG3-NMal-PEG3-NHS283.280YesYesYes
Mal-PEG3-N3Azido-PEG3-Maleimide10,000.000YesYesYes
Mal-PEG4-NMaleimide PEG4 NHS327.330YesYesYes
Mal-PEG5-NMal-PEG5-NHS371.380YesYesYes
Mal-propionic-N3-Maleimido-propionic NHS151.120YesYesYes
mana-A2′-OMe arabinose A343.2415,400YesYesYes
mana-C2′-OMe arabinose C310.217,200YesYesYes
mana-G2′-OMe arabinose G359.2411,500YesYesYes
mana-U2′-OMe arabinose U320.199,900YesYesYes
mA-PMemA P-methyl phosphonate341.2615,400YesYesYes
mAsmA dithiophosphate359.3215,400YesYesYes
MB-NMethylene Blue NHS425.8910,300YesYesYes
mCmC319.217,200YesYesYes
mC-PMemC P-methyl phosphonate10,000.007,200YesYesYes
mCsmC dithiophosphate335.277,200YesYesYes
MC-Val-Cit-PAB-PNPMC-Val-Cit-PAB-PNP598.650YesYesYes
mDAP2′-OMe 2,6-diamino purine358.2515,400YesYesYes
Me-5VPmUsmonomethyl on phosphate 5’VP mU dithiophosphate426.289,900YesNoNo
Me-PEG4Methyl-dPEG4218.240YesYesYes
Me-TetrazineMethyltetrazine PEG4418.440YesYesYes
Methacrylate-NMethacrylic acid NHS68.070YesYesYes
mGmG359.2411,500YesYesYes
mG-PMemG P-methyl phosphonate10,000.0011,500YesYesYes
mG-POEtmG P-Ethoxy387.0911,500YesYesYes
mGsmG dithiophosphate375.3111,500YesYesYes
mI2′-OMe-Inosine344.227,500YesYesYes
moeAMOE-A387.2915,400YesYesYes
moeDAP2′-moe 2,6-diamino purine10,000.0015,400YesYesYes
moeGMOE-G403.2811,500YesYesYes
moeI2′-MOE- inosine388.277,500YesYesYes
moeTMOE-T378.279,900YesYesYes
moeUMOE-U364.259,900YesYesYes
MSD-TagMSD tag with C4 NHS651.7311,670YesYesYes
mTmT334.229,900YesYesYes
mTsmT dithiophosphate10,000.009,900YesYesYes
mUmU320.209,900YesYesYes
mU-PMemU P-methyl phosphonate318.229,900YesYesYes
mUsmU dithiophosphate336.279,900YesYesYes
N1-Me-dAN1-Me dA328.2415,400YesYesYes
N1-Me-rAN1-Me-A344.2415,400YesYesYes
N2-Me-dGN2-Me dG343.2311,500YesYesYes
N3-CNEt-mUN3-cyanoethyl mU373.269,900YesYesYes
N3dUN3 pseudo dU, N3 iso dU290.178,700YesYesYes
N3-Me-dTN3-Me thymidine318.218,700YesYesYes
N6-Me-dAN6-Me-dA327.2415,400YesYesYes
N6-Me-rAN6-Me-rA343.2315,400YesYesYes
NED5′ NED708.8469,000YesNoNo
NH2-PEG12-COFmoc-N-amido-dPEG-TFP ester10,000.000YesYesYes
NH2-PEG24-NFmoc-PEG24-NHS1,128.350YesYesYes
O6-Me-dGO6-Me-dG343.2411,500YesYesYes
OleicOleic acid with AmC7(liner) linker443.610YesNoNo
Oleic-NOleic acid NHS264.450YesYesYes
Palm-NPalmitate NHS238.420YesYesYes
PC-AmPC Amino-Modifier371.320YesYesNo
PC-azidePC azide NHS525.500YesYesYes
PC-BiotinPC Biotin597.620YesNoYes
PC-Biotin-NPC Biotin NHS725.800YesYesYes
PC-DCA-AmC7Phosphatidylcholine (PC) DCA with AmC7(1,3-diol) linker783.500NoNoYes
PC-LinkerPC Linker259.150YesYesYes
pdC5-Propynyl dC327.237,400YesYesYes
pdU5-Propynyl dU328.228,700YesYesYes
PEG5K-MalPEG5K maleimide5,000.000YesYesYes
PhosPhosphate79.980YesNoYes
PMO-AMorpholino-A339.3015,400YesYesYes
PMO-CMorpholino-C315.277,200YesYesYes
PMO-GMorpholino-G355.2911,500YesYesYes
PMO-TMorpholino-T330.289,900YesYesYes
PPDiphosphate160.000YesNoNo
PPPTriphosphate239.940YesNoNo
Propargyl-PEG1-NPropargyl-PEG1-NHS, fragment of Alkyne110.110YesYesYes
Psd-dUpseudo dU290.178,700YesYesYes
Psd-rUPseudo ribo Uridine306.179,900YesYesYes
r2amP2-aminopurine 2′-OH329.2115,400YesYesYes
rArA329.2115,400YesYesYes
RanibizumabVEGF-A antagonist48,350.000YesYesYes
rAsrA dithiophosphate345.2715,400YesYesYes
rCrC305.187,200YesYesYes
rCsrC dithiophosphate321.257,200YesYesYes
rDAP2,6-diamino purine, 2′-OH344.2215,400YesYesYes
rGrG345.2111,500YesYesYes
rGsrG dithiophosphate361.2711,500YesYesYes
rIribo Inosine330.197,500YesYesYes
rUrU306.179,900YesYesYes
rUsrU dithiophosphate322.239,900YesYesYes
s-Cy5-NSulfo-Cy5 NHS623.7635,230YesYesYes
SIMASIMA, spectrascopically identical to HEX759.5431,600YesNoNo
SMCCSMCC-Mal NHS219.230YesYesYes
Sp12TetraEthyloxy Glycol(TEG) Spacer256.190YesYesYes
Sp18Spacer 18344.300YesYesYes
Sp9Spacer 9212.140YesYesYes
SpC12Spacer C12264.300YesYesYes
SpC3Propane diol, C3 Spacer138.060YesYesYes
SpC4Butane diol, C4 Spacer152.090YesYesYes
SpC6Hexane diol, spacer C6180.140YesYesYes
SpC9Nonane diol, spacer C9222.220YesYesYes
SPDB-NSPDB NHS211.300YesYesYes
SPDP-NSPDP NHS197.270YesYesYes
SpPCPC Spacer344.260YesYesYes
StearylStearyl, C18332.460YesYesYes
TAMRATAMRA with AmC7(1,3-diol) linker575.5529,100YesNoNo
TAMRA-dTTAMRA-dT870.850YesYesYes
TAMRA-NTAMRA-NHS412.4429,100YesYesYes
tC0tricyclic, 1,3-Diaza-2-Oxophenoxazine379.2611,000YesYesYes
tC-nitrotricyclic nitro440.320YesYesYes
TCO-NTCO NHS152.190YesYesYes
TCO-PEG12-NTCO PEG12 NHS751.900YesYesYes
TCO-PEG4-NTCO PEG4 NHS399.480YesYesYes
TEG-CholCholesteryl-TEG 3/5DMT755.970YesYesYes
Tetrazine-PEG5-NTetrazine PEG5 NHS489.520YesYesYes
Tetrazin-NTetrazine NHS198.180YesYesYes
Thiol-C3-SHThiol C3154.120YesYesYes
Thiol-C3-S-SThiol C3 disulfide244.270YesYesYes
Thiol-C6-dTThiol modifier C6 dT546.538,700YesYesYes
Thiol-C6-SHThiol Modifier C6 SH196.200YesYesYes
Thiol-C6-S-SThiol Modifier C6 S-S328.400YesYesYes
tmbtm-A2’O TMBTM A555.5015,400YesYesYes
tmbtm-C2’O TMBTM C531.477,200YesYesYes
tmbtm-G2’O TMBTM G571.5011,500YesYesYes
tmbtm-U2’O TMBTM U532.469,900YesYesYes
TNA-ATNA A299.1815,400YesYesYes
TNA-CTNA C275.157,400YesYesYes
TNA-GTNA G315.1811,500YesYesYes
TNA-TTNA T290.168,700YesYesYes
TNA-U-BzTNA U Bz0.009,900YesYesYes
Tocopherol-TEGTocopherol-TEG 3/5DMT698.910YesYesYes
T-POEtdT P-ethoxy332.258,700YesYesYes
Trebler-lTrebler long arm428.410YesYesYes
Trebler-sTrebler short arm370.330YesYesYes
UNA-AUNA-A331.2215,400YesYesYes
UNA-CUNA-C307.207,200YesYesYes
UNA-GUNA-G347.2211,500YesYesYes
UNA-UUNA-U308.189,900YesYesYes
Val-Cit-PAB-PNPFmoc Val-Cit-PAB-PNP10,000.000YesYesYes
VICVIC746.9197,000YesYesYes
VIC-NVIC NHS537.7397,000YesYesYes
ZSpermine408.520YesYesYes

Trademarks & Disclaimers
Alexa Fluor® dyes are registered trademarks of Molecular Probes, Inc.
ATTO™ Dyes are registered trademarks of ATTO Technology Inc.
Black Hole Quencher®, BHQ-1®, BHQ-2®, BHQ-dT®,and Quasar® are registered trademarks of Biosearch Technologies, Inc.
Cy3®, Cy5®, and Cy5.5® are registered trademarks of GE Healthcare.
FAM™, HEX™, ROX™, TAMRA™, JOE™, NED™ and VIC™ are trademarks of Applied Biosystems, a brand of Thermo Fisher Scientific.
LNA® is registered trademark of Exiqon A/S.
MGB™ is a trademark of Epoch Biosciences.
IRDye is a registered trademark of Li-COR Biosciences.
Eclipse™ Quencher and Super T are registered trademarks of ElitechGroup, Inc.
SNAP-tag® is a registered trademark of New England Biolabs, Inc
HaloTag® is a registered trademark of Promega Corporation.
Acrydite® is a registered trademark of Mosaic Technologies Corp.
MSD Tag® is a registered trademark of Meso Scale Diagnostics LLC.

Notes:

  • All codes need to be in a parenthesis except A, C, G, T (for DNA), rA, rC, rG, rU (for RNA), mA, mC, mG, mU (for 2′-OMe), and fA, fC, fG, fU (for 2′-F). e.g., (LNA-A)AmC fGrU(dU) (mT)
  • The default backbone linkage between two modification codes is phosphodiester except * for phosphorothioate and dithiophosphate, e.g., (dAs)*C*G* TCA and ^ for linkage made by post-synthesis conjugation, e.g., (TCO-N)^(C6NH2)ACGT.
  • This table never includes Customer proprietary code. If you are the owner of the code, feel free to use it in the sequence.
  • If you don’t see the one you need, please let us know by email oligosales@synoligo.com..

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